Package: backbone 2.1.3

backbone: Extracts the Backbone from Graphs

An implementation of methods for extracting an unweighted unipartite graph (i.e. a backbone) from an unweighted unipartite graph, a weighted unipartite graph, the projection of an unweighted bipartite graph, or the projection of a weighted bipartite graph (Neal, 2022 <doi:10.1371/journal.pone.0269137>).

Authors:Zachary Neal [aut, cre], Rachel Domagalski [aut], Bruce Sagan [ctb], Karl Godard [ctb]

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backbone.pdf |backbone.html✨
backbone/json (API)
NEWS

# Install 'backbone' in R:
install.packages('backbone', repos = c('https://zpneal.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zpneal/backbone/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

27 exports 39 stars 3.13 score 12 dependencies 2 dependents 1 mentions 26 scripts 960 downloads

Last updated 8 months agofrom:b5ee8acc23. Checks:OK: 7 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 22 2024
R-4.5-win-x86_64NOTEAug 22 2024
R-4.5-linux-x86_64NOTEAug 22 2024
R-4.4-win-x86_64OKAug 22 2024
R-4.4-mac-x86_64OKAug 22 2024
R-4.4-mac-aarch64OKAug 22 2024
R-4.3-win-x86_64OKAug 22 2024
R-4.3-mac-x86_64OKAug 22 2024
R-4.3-mac-aarch64OKAug 22 2024

Exports:backbone.extractbackbone.suggestbicmdisparityfastballfdsmfixedcolfixedfillfixedrowgloballanslogitmlfosdsmpbsdsmsparsifysparsify.with.geometricsparsify.with.gsparsparsify.with.hypergeometricsparsify.with.jaccardsparsify.with.localdegreesparsify.with.lsparsparsify.with.meetminsparsify.with.quadrilateralsparsify.with.simmeliansparsify.with.skeleton

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigRcpprlangvctrs

Introduction to Backbone

Zachary Neal, Michigan State University, [email protected]

Rendered frombackbone.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2023-02-15
Started: 2020-05-19

Readme and manuals

Help Manual

Help pageTopics
backbone: Extracts the Backbone from Graphsbackbone-package backbone
Extracts a backbone network from a backbone objectbackbone.extract
Suggest a backbone modelbackbone.suggest
Bipartite Configuration Modelbicm
Extract backbone using the Disparity Filterdisparity
Randomize a binary matrix using the fastball algorithmfastball
Extract backbone using the Fixed Degree Sequence Modelfdsm
Extract backbone using the Fixed Column Modelfixedcol
Extract backbone using the Fixed Fill Modelfixedfill
Extract backbone using the Fixed Row Modelfixedrow
Compute global threshold backboneglobal
Extract backbone using Locally Adaptive Network Sparsificationlans
Logit-based probabilities for SDSMlogit
Extract backbone using the Marginal Likelihood Filtermlf
Extract backbone using the Ordinal Stochastic Degree Sequence Modelosdsm
Poisson binomial distribution functionpb
Extract backbone using the Stochastic Degree Sequence Modelsdsm
Extract the backbone from a network using a sparsification modelsparsify
Extract Goldberg and Roth's (2003) Geometric backbonesparsify.with.geometric
Extract Satuluri et al's (2011) G-spar backbonesparsify.with.gspar
Extract Goldberg and Roth's (2003) Hypergeometric backbonesparsify.with.hypergeometric
Extract Goldberg and Roth's (2003) Jaccard backbonesparsify.with.jaccard
Extract Hamann et al.'s (2016) Local Degree backbonesparsify.with.localdegree
Extract Satuluri et al's (2011) L-spar backbonesparsify.with.lspar
Extract Goldberg and Roth's (2003) MeetMin backbonesparsify.with.meetmin
Extract Nocaj et al.'s (2015) Quadrilateral Simmelian backbonesparsify.with.quadrilateral
Extract Nick et al's (2013) Simmelian backbonesparsify.with.simmelian
Extract Karger's (1999) skeleton backbonesparsify.with.skeleton